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Utilities & Development
Utilities holds general housekeeping and data-management helpers; Development holds experimental focus-pair scripts.
Utilities
- Crop Patterns from HDF5 and save as Numpy Array — crop the central n×n scan positions into an output file.
- Python Environment Test Script — print the active Python environment to verify the environment dropdown.
- Merge several HDF5 files into one — merge HDF5 files from the FRAMES directory into one BLOSC2-compressed file.
- Image Inventory — list image files and show them in the Images pane.
- Cleanup — delete non-essential files to save disk space.
- Push Images to STATUS folder / to a local webserver — create annotated status images and a log for the 4d webserver.
Development contains experimental focus-pair scripts (import from SerialEM, CTF, drift correction, iciness, process). Most are explicitly marked “Under Development. Do not use.” — treat them as advanced/experimental only.